Skip to main content

A Validation Benchmark for Assessment of Medial Surface Quality for Medical Applications

  • Conference paper
Computer Vision Systems (ICVS 2013)

Part of the book series: Lecture Notes in Computer Science ((LNTCS,volume 7963))

Included in the following conference series:

  • 3320 Accesses

Abstract

Confident use of medial surfaces in medical decision support systems requires evaluating their quality for detecting pathological deformations and describing anatomical volumes. Validation in the medical imaging field is a challenging task mainly due to the difficulties for getting consensual ground truth. In this paper we propose a validation benchmark for assessing medial surfaces in the context of medical applications. Our benchmark includes a home-made database of synthetic medial surfaces and volumes and specific scores for evaluating surface accuracy, its stability against volume deformations and its capabilities for accurate reconstruction of anatomical volumes.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Blum, H.: A transformation for extracting descriptors of shape. MIT Press (1967)

    Google Scholar 

  2. Chang, M., Leymarie, F., Kimia, B.: 3d shape registration using regularized medial scaffolds. In: Proc. 3DPVT, pp. 987–994 (2004)

    Google Scholar 

  3. Crouch, J.R., Pizer, S.M., Chaney, E.L., Hu, Y.-C., Mageras, G.S., Zaider, M.: Automated Finite-Element analysis for deformable registration of prostate images. IEEE Transactions on Medical Imaging 26(10), 1379–1390 (2007)

    Article  Google Scholar 

  4. Fletcher, P.T., Lu, C., et al.: Principal Geodesic Analysis for the study of nonlinear statistics of shape. IEEE Trans. Med. Imag. 23(8), 995–1005 (2004)

    Article  Google Scholar 

  5. Giblin, P.J., Kimia, B.B., Pollitt, A.J.: Transitions of the 3d medial axis under a one-parameter family of deformations. PAMI 31(5), 900–918 (2009)

    Article  Google Scholar 

  6. Gil, D., Borràs, A.: Medial surfaces database, http://iam.cvc.uab.es/downloads/medial-surfaces-database (accessed: April 25, 2013)

  7. Gil, D., Garcia-Barnes, J., Hernandez, A.A.: Manifold parametrization of the left ventricle for a statistical modelling of its complete anatomy. In: SPIE 2001. LNCS, pp. 304–314 (2010)

    Google Scholar 

  8. Gray, A.: Tubes. Birkhäuser (2004)

    Google Scholar 

  9. Heimann, T., van Ginneken, B., Styner, M.A., Arzhaeva, Y., Aurich, V.: Comparison and evaluation of methods for liver segmentation from CT datasets. IEEE Trans. Med. Imag. 28(8), 1251–1265 (2009)

    Article  Google Scholar 

  10. Keim, D., Panse, C., North, S.C.: Medial-axis-based cartograms. IEEE Comput. Graph. Appl. 25, 60–68 (2005)

    Article  Google Scholar 

  11. Liu, X., Linguraru, M.G., Yao, J., Summers, R.M.: Organ pose distribution model and an MAP framework for automated abdominal multi-organ localization. In: Liao, H., "Eddie" Edwards, P.J., Pan, X., Fan, Y., Yang, G.-Z. (eds.) MIAR 2010. LNCS, vol. 6326, pp. 393–402. Springer, Heidelberg (2010)

    Chapter  Google Scholar 

  12. Pizer, S.M., Fletcher, P.T., et al.: A method and software for segmentation of anatomic object ensembles by deformable M-Reps. Medical Physics 32(5), 1335–1345 (2005)

    Article  Google Scholar 

  13. Pudney, C.: Distance-ordered homotopic thinning: A skeletonization algorithm for 3D digital images. Comp. Vis. Imag. Underst. 72(2), 404–413 (1998)

    Article  Google Scholar 

  14. Siddiqi, K., Zhang, J., Macrini, D., et al.: Retrieving articulated 3-d models using medial surfaces. Mach. Vis. Appl. 19(4), 261–275 (2008)

    Article  Google Scholar 

  15. Stough, J.V., Broadhurst, R.E., Pizer, S.M., Chaney, E.L.: Regional appearance in deformable model segmentation. In: Karssemeijer, N., Lelieveldt, B. (eds.) IPMI 2007. LNCS, vol. 4584, pp. 532–543. Springer, Heidelberg (2007)

    Chapter  Google Scholar 

  16. Styner, M., Gerig, G., Lieberman, J., Jones, D., Weinberger, D.: Statistical shape analysis of neuroanatomical structures based on medial models. Med. Im. Ana. 7(3), 207–220 (2003)

    Article  Google Scholar 

  17. Styner, M., Lieberman, J.A., Pantazis, D., Gerig, G.: Boundary and medial shape analysis of the hippocampus in schizophrenia. Medical Image Analysis 8(3), 197–203 (2004)

    Article  Google Scholar 

  18. Sun, H., Avants, B.B., Frangi, A.F., Sukno, F., Gee, J.C., Yushkevich, P.A.: Cardiac medial modeling and time-course heart wall thickness analysis. In: Metaxas, D., Axel, L., Fichtinger, G., Székely, G. (eds.) MICCAI 2008, Part II. LNCS, vol. 5242, pp. 766–773. Springer, Heidelberg (2008)

    Chapter  Google Scholar 

  19. Sun, H., Frangi, A.F., Wang, H., Sukno, F.M., Tobon-Gomez, C., Yushkevich, P.A.: Automatic cardiac mri segmentation using a biventricular deformable medial model. In: Jiang, T., Navab, N., Pluim, J.P.W., Viergever, M.A. (eds.) MICCAI 2010, Part I. LNCS, vol. 6361, pp. 468–475. Springer, Heidelberg (2010)

    Chapter  Google Scholar 

  20. Vera, S., Gil, D., Borras, A., George Linguraru, M., Gonzalez, M.A.: Geometric steerable medial maps. Machine Vision Applications (in press)

    Google Scholar 

  21. Vera, S., Gil, D., Borràs, A., Sánchez, X., Pérez, F., Linguraru, M.G., González Ballester, M.A.: Computation and evaluation of medial surfaces for shape representation of abdominal organs. In: Yoshida, H., Sakas, G., Linguraru, M.G. (eds.) Abdominal Imaging. LNCS, vol. 7029, pp. 223–230. Springer, Heidelberg (2012)

    Chapter  Google Scholar 

  22. Vera, S., Gonzalez, M.A., Gil, D.: A medial map capturing the essential geometry of organs. In: Proceedings of ISBI. IEEE (2012)

    Google Scholar 

  23. Wade, L., Parent, R.E.: Automated generation of control skeletons for use in animation. The Visual Computer 18, 97–110 (2002)

    Article  MATH  Google Scholar 

  24. Yao, J., Summers, R.M.: Statistical location model for abdominal organ localization. In: Yang, G.-Z., Hawkes, D., Rueckert, D., Noble, A., Taylor, C. (eds.) MICCAI 2009, Part II. LNCS, vol. 5762, pp. 9–17. Springer, Heidelberg (2009)

    Chapter  Google Scholar 

  25. Yushkevich, P.A.: Continuous medial representation of brain structures using the biharmonic PDE. NeuroImage 45(1), 99–110 (2009)

    Article  MathSciNet  Google Scholar 

  26. Yushkevich, P.A., Zhang, H., Gee, J.C.: Continuous medial representation for anatomical structures. IEEE Trans. Medical Imaging 25(12), 1547–1564 (2006)

    Article  Google Scholar 

  27. Yushkevich, P.A., Zhang, H., Simon, T.J., Gee, J.C.: Structure-specific statistical mapping of white matter tracts. NeuroImage 41(2), 448–461 (2008)

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2013 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Borràs, A., Gil, D., Vera, S., González, M.A. (2013). A Validation Benchmark for Assessment of Medial Surface Quality for Medical Applications. In: Chen, M., Leibe, B., Neumann, B. (eds) Computer Vision Systems. ICVS 2013. Lecture Notes in Computer Science, vol 7963. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-39402-7_34

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-39402-7_34

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-39401-0

  • Online ISBN: 978-3-642-39402-7

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics