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Label Consistent Multiclass Discriminative Dictionary Learning for MRI Segmentation

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Articulated Motion and Deformable Objects (AMDO 2014)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 8563))

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Abstract

The automatic segmentation of multiple subcortical structures in brain Magnetic Resonance Images (MRI) still remains a challenging task. In this paper, we address this problem using sparse representation and discriminative dictionary learning, which have shown promising results in compression, image denoising and recently in MRI segmentation. Particularly, we use multiclass dictionaries learned from a set of brain atlases to simultaneously segment multiple subcortical structures. We also impose dictionary atoms to be specialized in one given class using label consistent K-SVD, which can alleviate the bias produced by unbalanced libraries, present when dealing with small structures. The proposed method is compared with other state of the art approaches for the segmentation of the Basal Ganglia of 35 subjects of a public dataset. The promising results of the segmentation method show the efficiency of the multiclass discriminative dictionary learning algorithms in MRI segmentation problems.

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References

  1. Babalola, K., Patenaude, B., Aljabar, P., Schnabel, J., Kennedy, D., Crum, W., Smith, S., Cootes, T., Jenkinson, M., Rueckert, D.: An evaluation of four automatic methods of segmenting the subcortical structures in the brain. Neuroimage 47(4) (2009)

    Google Scholar 

  2. Aljabar, P., Heckemann, R., Hammers, A., Hajnal, J., Rueckert, D.: Multi-atlas based segmentation of brain images: Atlas selection and its effect on accuracy. Neuroimage 46(3), 726–738 (2009)

    Article  Google Scholar 

  3. Scherrer, B., Forbes, F., Garbay, C., Dojat, M.: Fully bayesian joint model for MR brain scan tissue, structure segmentation. In: Metaxas, D., Axel, L., Fichtinger, G., Székely, G. (eds.) MICCAI 2008, Part II. LNCS, vol. 5242, pp. 1066–1074. Springer, Heidelberg (2008)

    Chapter  Google Scholar 

  4. Wolz, R., Aljabar, P., Rueckert, D., Heckemann, R., Hammers, A.: Segmentation of subcortical structures and the hippocampus in brain mri using graph-cuts and subject-specific a-priori information. IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI), 470–473 (2009)

    Google Scholar 

  5. Rousseau, F., Habas, P., Studholme, C.: A supervised patch-based approach for human brain labeling. IEEE Trans. on MI 30(10) (2011)

    Google Scholar 

  6. Coupé, P., Manjón, J., Fonov, V., Pruessner, J., Robles, M., Collins, D.: Patch-based segmentation using expert priors: Application to hippocampus and ventricle segmentation. Neuroimage 54(2), 940–954 (2011)

    Article  Google Scholar 

  7. Wang, H., Yushkevich, P.: Dependency prior for multi-atlas label fusion. In: ISBI: From Nano to Macro (ISBI), pp. 892–895 (2012)

    Google Scholar 

  8. Tong, T., Wolz, R., Coupé, P., Hajnal, J.V., Rueckert, D.: Segmentation of MR images via discriminative dictionary learning and sparse coding: Application to hippocampus labeling. Neuroimage 76, 11–23 (2013)

    Article  Google Scholar 

  9. Elad, M., Aharon, M.: Image denoising via sparse and redundant representations over learned dictionaries. IEEE Trans. on IP 15(12) (2006)

    Google Scholar 

  10. Bryt, O., Elad, M.: Compression of facial images using the K-SVD algorithm. IEEE Trans. on IP 19(4) (2008)

    Google Scholar 

  11. Tibshirani, R.: Regression shrinkage and selection via the lasso. Journal of the Royal Statistical Society: Series B, 267–288 (1996)

    Google Scholar 

  12. Zou, H., Hastie, T.: Regularization and variable selection via the elastic net. Journal of the Royal Statistical Society: Series B 67(2), 301–320 (2005)

    Article  MATH  MathSciNet  Google Scholar 

  13. Engan, K., Aase, S.O., Husoy, J.H.: Frame based signal compression using method of optimal directions (MOD). IEEE Intern. Symp. Circ. Syst. (1999)

    Google Scholar 

  14. Aharon, M., Elad, M., Bruckstein, A.M.: The K-SVD: An algorithm for designing of overcomplete dictionaries for sparse representations. IEEE Trans. SP 54(11) (2006)

    Google Scholar 

  15. Zhang, Q., Li, B.: Discriminative K-SVD for dictionary learning in face recognition. In: CVPR, pp. 2691–2698 (2010)

    Google Scholar 

  16. Jiang, Z., Lin, Z., Davis, L.: Learning a discriminative dictionary for sparse coding via label consistent k-svd. In: CVPR, pp. 1697–1704 (2011)

    Google Scholar 

  17. Mairal, J., Bach, F., Ponce, J., Sapiro, G.: Online Dictionary Learning for Sparse Coding. In: International Conference on Machine Learning, Montreal, Canada (2009)

    Google Scholar 

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Benkarim, O.M., Radeva, P., Igual, L. (2014). Label Consistent Multiclass Discriminative Dictionary Learning for MRI Segmentation. In: Perales, F.J., Santos-Victor, J. (eds) Articulated Motion and Deformable Objects. AMDO 2014. Lecture Notes in Computer Science, vol 8563. Springer, Cham. https://doi.org/10.1007/978-3-319-08849-5_14

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  • DOI: https://doi.org/10.1007/978-3-319-08849-5_14

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-08848-8

  • Online ISBN: 978-3-319-08849-5

  • eBook Packages: Computer ScienceComputer Science (R0)

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