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Dominika Tkaczyk

Dominika joined Crossref’s R&D group in the Tech team in August 2018. Her research interests focus on machine learning and natural language processing, in particular their applications to the automated analysis of scientific literature and research outputs. Previously, she has worked on a number of projects, including the extraction of machine-readable metadata from scholarly documents, predicting people’s demographic features based on their internet browsing history, and developing new metrics for assessing the effectiveness of worldwide air traffic. Dominika’s career started in Poland, where she was a researcher and a data scientist at the University of Warsaw. She received a PhD in Computer Science from the Polish Academy of Sciences in 2016. In 2017 Dominika was awarded a Marie Sklodowska-Curie EDGE Fellowship and moved to Ireland to work as a postdoctoral researcher at Trinity College Dublin. When not busy training yet another random forest or neural network, you can find her at the nearest Doctor Who convention or rock/metal concert.

Read more about Dominika Tkaczyk on their team page.

Discovering relationships between preprints and journal articles

Dominika Tkaczyk

Dominika Tkaczyk – 2023 December 07

In PreprintsLinking

In the scholarly communications environment, the evolution of a journal article can be traced by the relationships it has with its preprints. Those preprint–journal article relationships are an important component of the research nexus. Some of those relationships are provided by Crossref members (including publishers, universities, research groups, funders, etc.) when they deposit metadata with Crossref, but we know that a significant number of them are missing. To fill this gap, we developed a new automated strategy for discovering relationships between preprints and journal articles and applied it to all the preprints in the Crossref database. We made the resulting dataset, containing both publisher-asserted and automatically discovered relationships, publicly available for anyone to analyse.

The more the merrier, or how more registered grants means more relationships with outputs

One of the main motivators for funders registering grants with Crossref is to simplify the process of research reporting with more automatic matching of research outputs to specific awards. In March 2022, we developed a simple approach for linking grants to research outputs and analysed how many such relationships could be established. In January 2023, we repeated this analysis to see how the situation changed within ten months. Interested? Read on!

Follow the money, or how to link grants to research outputs

The ecosystem of scholarly metadata is filled with relationships between items of various types: a person authored a paper, a paper cites a book, a funder funded research. Those relationships are absolutely essential: an item without them is missing the most basic context about its structure, origin, and impact. No wonder that finding and exposing such relationships is considered very important by virtually all parties involved. Probably the most famous instance of this problem is finding citation links between research outputs. Lately, another instance has been drawing more and more attention: linking research outputs with grants used as their funding source. How can this be done and how many such links can we observe?

Double trouble with DOIs

Detective Matcher stopped abruptly behind the corner of a short building, praying that his loud heartbeat doesn’t give up his presence. This missing DOI case was unlike any other before, keeping him awake for many seconds already. It took a great effort and a good amount of help from his clever assistant Fuzzy Comparison to make sense of the sparse clues provided by Miss Unstructured Reference, an elegant young lady with a shy smile, who begged him to take up this case at any cost.

Crossref metadata for bibliometrics

Our paper, Crossref: the sustainable source of community-owned scholarly metadata, was recently published in Quantitative Science Studies (MIT Press). The paper describes the scholarly metadata collected and made available by Crossref, as well as its importance in the scholarly research ecosystem.

What’s your (citations’) style?

Bibliographic references in scientific papers are the end result of a process typically composed of: finding the right document to cite, obtaining its metadata, and formatting the metadata using a specific citation style. This end result, however, does not preserve the information about the citation style used to generate it. Can the citation style be somehow guessed from the reference string only? TL;DR I built an automatic citation style classifier. It classifies a given bibliographic reference string into one of 17 citation styles or “unknown”.

What if I told you that bibliographic references can be structured?

Last year I spent several weeks studying how to automatically match unstructured references to DOIs (you can read about these experiments in my previous blog posts). But what about references that are not in the form of an unstructured string, but rather a structured collection of metadata fields? Are we matching them, and how? Let’s find out.

Reference matching: for real this time

In my previous blog post, Matchmaker, matchmaker, make me a match, I compared four approaches for reference matching. The comparison was done using a dataset composed of automatically-generated reference strings. Now it’s time for the matching algorithms to face the real enemy: the unstructured reference strings deposited with Crossref by some members. Are the matching algorithms ready for this challenge? Which algorithm will prove worthy of becoming the guardian of the mighty citation network? Buckle up and enjoy our second matching battle!

Matchmaker, matchmaker, make me a match

Matching (or resolving) bibliographic references to target records in the collection is a crucial algorithm in the Crossref ecosystem. Automatic reference matching lets us discover citation relations in large document collections, calculate citation counts, H-indexes, impact factors, etc. At Crossref, we currently use a matching approach based on reference string parsing. Some time ago we realized there is a much simpler approach. And now it is finally battle time: which of the two approaches is better?

What does the sample say?

At Crossref Labs, we often come across interesting research questions and try to answer them by analyzing our data. Depending on the nature of the experiment, processing over 100M records might be time-consuming or even impossible. In those dark moments we turn to sampling and statistical tools. But what can we infer from only a sample of the data?